(selected)

McDaniel, M.D., J.A. Bird, J. Pett-Ridge, E. Marin-Spiotta, T.M. Schmidt, A.S. Grandy. 2023. Diversifying and perennializing plants in agroecosystems alters retention of new C and N from crop residues. Ecological Applications doi: 10.1002/eap.2784

Santos, F., J.A. Bird, A. A. Berhe. 2022. Dissolved pyrogenic carbon leaching in soil: Effects of soil depth and pyrolysis temperature. Geoderma. 424:116011. doi: 10.1016/j.geoderma.2022.116011

Santos, F., D.M. Rice, J.A. Bird, A. A. Berhe. 2021. Pyrolysis temperature and soil depth interactions determine PyC turnover and induced soil organic carbon priming. Biogeochemistry 153:47-65. doi: 10.1007/s10533-021-00767-x

Brigham, B., J.A. Bird, A.R. Juhl, C.J. Zappa, A.D. Montero, G. O’Mullan. 2019. Anthropogenic inputs from a coastal megacity are linked to greenhouse gas concentrations in the surrounding estuary. Limnology & Oceanography 64:2497-2511. doi: 10.1002/lno.11200

Auclerc A., J.M., LeMoine, P.J. Hatton, J.A. Bird, K.J. Nadelhoffer. 2019. Decadal post-fire succession of soil invertebrate communities is dependent on the soil surface properties in a Northern Temperate forest. Science of the Total Environment 647: 1058-1068. doi: 10.1016/j.scitotenv.2018.08.041

Gibson, C.D., P.J. Hatton, J.A. Bird, K.J. Nadelhoffer, C.P. Ward, R.E. Stark, T.R. Filley. 2018. Interacting controls of pyrolysis temperature and plant taxa on the degradability of PyOM in a fire-prone Northern Temperate forest soil.  Soil Systems  2:48-65.  (Feature article in Special Issue on SOM Dynamics) doi:10.3390/soilsystems203004

Brigham, B., G. O’Mullan, J.A. Bird. 2018. Acetate additions stimulate CO2 and CH4 production from urban wetland soils. Soil Science Society of America Journal 82:1147-1159 doi: 10.2136/sssaj2018.01.0034

Gibson, C.D., P.J. Hatton, J.A. Bird, K.J. Nadelhoffer, T.R. Filley. 2018. Tree taxa and pyrolysis temperature interact to control pyrogenic organic matter induced native soil organic carbon priming. Soil Biology & Biochemistry 119:174-183. doi: 10.1016/j.soilbio.2018.01.022

Pries, C. H., J.A. Bird, C. Castanha, P.J. Hatton, M.S. Torn. 2017. Long term decomposition: The influence of litter type and soil horizon on retention of plant carbon and nitrogen in soils. Biogeochemistry Letters 34:5-16. doi: 10.1007/s10533-017-0345-6

Wang, R.  C.D. Gibson, T.D. Berry, Y. Jiang, J.A. Bird, T.R. Filley.  2017. Photooxidation of pyrogenic organic matter (PyOM) reduces the reactive, labile C pool and the apparent soil oxidative microbial enzyme response. Geoderma  293:10-18. doi: 10.1016/j.geoderma.2017.01.011

Hatton, P.J., S. Chatterjee, T.R. Filley, K. Dastmalchi, A.F. Plante, S. Abiven, X. Ga, C.A. Masiello, S.W. Leavitt, K.J. Nadelhoffer, R.E. Stark, J.A. Bird.  2016. Tree taxa and pyrolysis temperature interact to control the efficacy of pyrogenic organic matter formation. Biogeochemistry 130: 103-116. doi: 10.1007/s10533-016-0245-1

Santos, F., K.J. Nadelhoffer, J.A. Bird. 2016. Rapid fine root C and N mineralization in a northern temperate forest soil. Biogeochemistry 128:187-200. doi: 10.1007/s10533-016-0202-z

Gibson, C., T.D. Berry, R. Wang, J.A. Spencer, C.T. Johnston, Y. Jiang, J.A. Bird, T.R. Filley. 2016. Weathering of pyrogenic organic matter induces fungal oxidative enzyme response in single culture inoculation experiments. Organic Geochemistry 92:32-41. doi:10.1016/j.orggeochem.2015.12.003

Crumsey, J.M., Y. Capowiez, M.M. Goodsitt, S. Larson, J.M. Le Moine, J.A. Bird, G.W. Kling, K.J. Nadelhoffer. 2015. Exotic earthworm community composition interacts with soil texture to affect redistribution and retention of litter-derived C and N in northern temperate forest soils. Biogeochemistry 126:379-395. doi: 10.1007/s10533-015-0164-6

Hatton, P.J.,  C. Castanha, M.S. Torn, J.A. Bird. 2015. Litter type control on soil C and N stabilization dynamics in a temperate forest. Global Change Biology 21:1358–1367. doi: 10.1111/gcb.1278

Throckmorton, H., J.A. Bird,  N. Monte, T. Doane, M.K. Firestone, W.R. Horwath. 2015. The soil matrix increases microbial C stabilization in temperate and tropical forest soils. Biogeochemistry 122:35–45. doi: 10.1007/s10533-014-0027-6

Maestrini, B., S. Abiven, N. Singh, J.A. Bird, M.S. Torn, M.W.I. Schmidt. 2014. Carbon losses from pyrolysed and original wood in a forest soil under natural and increased N deposition. Biogeosciences 11: 5199–5213. doi: 10.5194/bg-11-5199-2014

Santos, F., M.P. Fraser, J.A. Bird. 2014. Atmospheric black carbon deposition and characterization of biomass burning tracers in a northern temperate forest. Atmospheric Environment 95:383-390. doi: 10.1016/j.atmosenv.2014.06.038

Singh, N., S. Abiven, B. Maestrini, J.A. Bird, M.S. Torn,  M.W.I Schmidt. 2014. Transformation and stabilization of pyrogenic organic matter in a temperate forest field experiment. Global Change Biology 20:1629–1642. doi: 10.1111/gcb.12459

Throckmorton, H., J.A. Bird, L. Dane, M.K. Firestone, W.R. Horwath. 2012. The source of microbial C has little impact on soil organic matter stabilization in forest ecosystems. Ecology Letters 15: 1257–1265 doi: 10.1111/j1461-0248. 2012.01848.x

Chatterjee, S., F. Santos, S. Abiven, B. Itin, R. Stark, J.A. Bird. 2012. Elucidating the chemical structure of pyrogenic organic matter by combining magnetic resonance, mid-infrared spectroscopy and mass spectrometry. Organic Geochemistry 51:35–44. doi: 10.1016/j.orggeochem.2012.07.006

Santos, F., M.S. Torn., J.A. Bird. 2012. Biological degradation of pyrogenic organic matter in temperate forest soils. Soil Biology & Biochemistry 51:115-124. doi: 10.1016/j.soilbio.2012.04.005

Yarnes, C., F. Santos, N. Singh, S. Abiven, M.W.I. Schmidt, J.A. Bird. 2011. Stable isotopic analysis of pyrogenic organic matter in soils by LC-IRMS of benzene polycarboxylic acids. Rapid Communications in Mass Spectrometry 25:3723–3731. doi: 10.1002/rcm.5272

Mambelli, S.,  J.A. Bird, G. Gleixner, T.E. Dawson, M.S. Torn. 2011. Relative contribution of needle and fine root pine litter to the molecular composition of soil organic matter after in situ degradation. Organic Geochemistry 42:1099-1108. doi: 10.1016/j.orggeochem.2011.06.008

Bird, J.A., D. Herman, M.K. Firestone. 2011. Rhizosphere priming of soil organic matter by bacterial groups in a grassland soil. Soil Biology & Biochemistry Special Section 43:718-725. doi: 10.1016/jsoilbio.2010.08.010

Gärdenäs, A.I. G.I. Ågren, J.A. Bird, M. Clarholm, S. Hallin, P. Ineson, T. Kätterer, H. Knicker,  S.I. Nilsson, T. Näsholm, S. Ogle, K. Paustian, T. Persson, J. Stendahl. 2011. Knowledge gaps in soil C and N interactions - From molecular to global scale. Soil Biology &  Biochemistry Special Section 43:702-717. doi: 10.1016/jsoilbio.2010.04.006

Fan, T.W.-M., J.A. Bird, E L. Brodie, A.N. Lane. 2009. 13C-Isotopomer-based metabolomics of  microbial groups isolated from two forest soils. Metabolomics 5 :108–122. doi: 10.1007/s11306-0080150-2

Bird, J.A., M. Kleber, M.S. Torn. 2008. 13C and 15N stabilization dynamics in soil organic matter fractions during needle and fine root decomposition. Organic Geochemistry 39:465–477.

Bird, J.A. and M.S. Torn. 2006. Fine roots versus needles: A comparison of 13C and 15N dynamics in a ponderosa pine forest soil. Biogeochemistry 79:361-382.

Bird, J.A., C. van Kessel, W.R. Horwath. 2003. Stabilization of 13C-carbon and immobilization of 15N-nitrogen from rice straw in humic fractions. Soil Sci. Soc. Am. J. 67:806-815.

Torn, M.S., S. Davis, J.A. Bird, M.R. Shaw, M. Conrad. 2003. Automated analyses of 13C/12C  ratios in CO2 and dissolved inorganic carbon for ecological and environmental applications. Rapid Communications in Mass Spectrometry 17:2575-2582.

Bird, J.A., C. van Kessel, W.R. Horwath. 2002. Nitrogen dynamics in humic fractions under alternative straw management in temperate rice. Soil Sci. Soc. Am. J. 66:478-488.

Bird, J.A., G.S. Pettygrove, J.M. Eadie. 2000. The impact of waterfowl foraging on the decomposition of rice straw: mutual benefits for rice growers and waterfowl. J. Appl. Ecol.  37:728-741.